O K, here goes.
The trans must be matched to the application. The guts are the same but the valve body and governor is not. Install the trans with the wrong valve body and you will get early or late upshifts, over revving or bogging. If this trans came from a bus with the same engine and size bus with the same axle ratio, you are golden. otherwise send the valve body to allison for reconfiguring.
Flywheel, same.
flexplate maybe same.
shift linkages, same
modulator, same
drive shaft, different, uses different U joints and length.
Oil cooler lines on the 643 are bigger. using the 545 lines may cause running hot and restricted flow to the converter. Some 643s used the smaller lines tho. check for fit.
The cooler in the radiator may be smaller too on the 545.
You will not be using the adapter ring on the flywheel housing, unless yours is a #3. then you need the whole housing, flywheel , etc..