I appreciate all your comments - thanks!
Maybe a couple details will clarify the design intent.
First - the front rib (rib1) and the rearmost rib (rib6) are not going to be cut. Primary reason is they are under and support the ends of the fiberglass shells that Thomas uses on the Minotour. In the back, it's over the bed and NBD. In the front, it defines the start of the bus body and is directly over the stair from the cutaway chassis into the Thomas body.
I did not want to deal with modifying the fiberglass. I had a project boat once - if I never grind fiberglass again in my life it will be too soon.
Ribs 2, 3, 4, and 5 are getting cut as shown.
The result is I will be able to step UP into the bus and be standing in the trolley area in front of the shower. Going OUT of the bus, I'll need to be a little more careful with my head. Like the doorframe - AMHIKT.
The geometry of the roof cut is perpendicular to the skin surface. It's a 12" lift, and with the stub ribs as shown, I get a resulting nice angle on the skylight walls, a great place for a drip edge, and an easily replicated geometry fabrication for the stubs.
I've put beams in the form of U-channels on the lower and upper cut ends. The lower ones will weld out to rib1 and rib6, the upper ones will tie into plywood bulkheads (not shown) mounted to the ribs and supporting the raw edges of the roof panels. They also provide riveting surfaces for skins.
It will effect structural integrity, no doubt. I'm not going to attempt to model it with finite element analysis. I don't have the chops or the software license.
That said, I think it's as strong as it needs to be. Thomas famously put a full sized bus on top of a Minotour with a crane. I'm not transporting school children or meeting FMVSS for buses. If I feel it's not good enough when fabricating, I'll add inner liner tubes to the existing channels.
If I roll it, the roof is only one of my concerns.... ;>)
Last piece of fun - the skylights are designed to fit aftermarket VW Samba windows and gaskets. I personally think that's wicked cool.
Insurance is different for the E-series cutaways. Technically, my VIN is an incomplete vehicle. It's 14050 GVWR, so under commercial licensing. Its registered, titled, and insured as a van.
I think that covers the questions?
I've never done exactly this before, many of you have, I'd be happy to hear your thoughts.